Sediment microbial community structure associated to different ecological types of mangroves in Celestún, a coastal lagoon in the Yucatan Peninsula, Mexico.

Mangroves are unique coastal ecosystems, which have many important ecological functions, as they are a reservoir of many marine species well adapted to saline conditions and are fundamental as sites of carbon storage. Although the microbial contribution to nutrient cycling in these ecosystems has been well recognized, there is a lack of information regarding the microbial composition and structure of different ecological types of mangrove forests. In this study, we characterized the microbial community (Bacteria and Archaea) in sediments associated with five ecological types of mangrove forests in a coastal lagoon dominated by Avicennia germinans and Rhizophora mangle, through 16S rRNA-V4 gene sequencing. Overall, Proteobacteria (51%), Chloroflexi (12%), Gemmatimonadetes (5%) and Planctomycetes (6%) were the most abundant bacterial phyla, while Thaumarchaeota (30%), Bathyarchaeota (21%) and Nanoarchaeaeota (18%) were the dominant archaeal phyla. The microbial composition associated with basin mangroves dominated by Avicennia germinans was significantly different from the other ecological types, which becomes relevant for restoration strategies.

Effects of a Light Crude Oil Spill on a Tropical Coastal Phytoplankton Community.

Oiling scenarios following spills vary in concentration and usually can affect large coastal areas. Consequently, this research evaluated different crude oil concentrations (10, 40, and 80 mg L-1) on the nearshore phytoplanktonic community in the southern Gulf of Mexico. This experiment was carried out for ten days using eight units of 2500 L each; factors monitored included shifts in phytoplankton composition, physicochemical parameters and the culturable bacterial abundance of heterotrophic and hydrocarbonoclastic groups. The temperature, salinity, and nutrient concentrations measured were within the ranges previously reported for Yucatan Peninsula waters. The total hydrocarbon concentration (TPH) in the control at T0 indicated the presence of hydrocarbons (PAHs 0.80 µg L-1, aliphatics 7.83 µg L-1 and UCM 184.09 µg L-1). At T0, the phytoplankton community showed a similar assemblage structure and composition in all treatments. At T10, the community composition remained heterogeneous in the control, in agreement with previous reports for the area. However, for oiled treatments, Bacillariophyceae dominated at T10. Hydrocarbonoclastic bacteria were associated with oiled treatments throughout the experiment, while heterotrophic bacteria were associated with control conditions. Our results agreed with previous works at the taxonomic level showing the presence of Bacillariophyceae and Dinophyceae in oil-related treatments, where these groups showed the major interactions in co-occurrence networks. In contrast, Chlorophyceae showed the key node in the co-occurrence network for the control. This study aims to contribute to knowledge on phytoplankton community shifts during a crude oil spill in subtropical oligotrophic regions.

Seagrass contribution to blue carbon in a shallow karstic coastal area of the Gulf of Mexico.

Seagrass meadows provide multiple ecosystem services, including carbon sequestration. However, seagrass meadows are among the most threatened ecosystems worldwide. Determining the magnitude of the carbon stocks in seagrass meadows at the regional scale allows for the estimation of their global magnitude and identification of their importance in regional environmental mitigation strategies. The objective of the present study was to determine the structure of seagrass meadows in the Los Petenes Biosfera Reserve (LPBR) and evaluate their contributions to sinks of carbon in this system, located in Yucatan, which is considered the region with the largest seagrass extension in Mexico. Analyses of the seagrass meadows were executed following standardized protocols (spectral analysis, and isotope and carbon stock analyses). The LPBR stores an average of 2.2 ± 1.7 Mg C ha-1 in living biomass and 318 ± 215 Mg C ha-1 in sediment (top 1 m), and this carbon stock decreases with water depth. The seagrass community extends 149,613 ha, which represents the largest organic carbon stock (47 Tg C) documented in seagrass meadows in Mexico. Macroalgae and seagrass represent 76% of the organic carbon stored in sediment. If LPBR seagrass meadows are lost due to natural or anthropogenic impacts, 173 Tg CO2eqemissions could be released, which corresponds to the emissions generated by fossil fuel combustion of 27% of the current Mexican population. This information emphasizes the importance of seagrass meadows as a carbon sink in the region and their contribution to climate change mitigation, thus allowing for the implementation of necessary conservation strategies.

Blue carbon of Mexico, carbon stocks and fluxes: a systematic review.

Mexico has more than 750,000 ha of mangroves and more than 400,000 ha of seagrasses. However, approximately 200,000 ha of mangroves and an unknown area of seagrass have been lost due to coastal development associated with urban, industrial and tourist purposes. In 2018, the approved reforms to the General Law on Climate Change (LGCC) aligned the Mexican law with the international objectives established in the 2nd Article of the Paris Agreement. This action proves Mexico's commitment to contributing to the global target of stabilizing the greenhouse gas emissions concentration in the planet. Thus, restoring and conserving mangrove and seagrass habitats could contribute to fulfilling this commitment. Therefore, as a first step in establishing a mitigation and adaptation plan against climate change with respect to conservation and restoration actions of these ecosystems, we evaluated Mexican blue carbon ecosystems through a systematic review of the carbon stock using the standardized method of Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA). We used the data from 126 eligible studies for both ecosystems (n = 1220). The results indicated that information is missing at the regional level. However, the average above and below ground organic carbon stocks from mangroves in Mexico is 113.6 ± 5.5 (95% CI [99.3-118.4]) Mg Corg ha-1 and 385.1 ± 22 (95% CI [344.5-431.9]) Mg Corg ha-1, respectively. The variability in the Corg stocks for both blue carbon ecosystems in Mexico is related to variations in climate, hydrology and geomorphology observed along the country's coasts in addition to the size and number of plots evaluated with respect to the spatial cover. The highest values for mangroves were related to humid climate conditions, although in the case of seagrasses, they were related to low levels of hydrodynamic stress. Based on the official extent of mangrove and seagrass area in Mexico, we estimate a total carbon stock of 237.7 Tg Corg from mangroves and 48.1 Tg Corg from seagrasses. However, mangroves and seagrasses are still being lost due to land use change despite Mexican laws meant to incorporate environmental compensation. Such losses are largely due to loopholes in the legal framework that dilute the laws' effectiveness and thus ability to protect the ecosystem. The estimated emissions from land use change under a conservative approach in mangroves of Mexico were approximately 24 Tg CO2e in the last 20 years. Therefore, the incorporation of blue carbon into the carbon market as a viable source of supplemental finance for mangrove and seagrass protection is an attractive win-win opportunity.

Taxocoenosis of epibenthic dinoflagellates in the coastal waters of the northern Yucatan Peninsula before and after the harmful algal bloom event in 2011-2012.

Eutrophication causes the major impact in the coastal waters of the state of Yucatan. In general, loss of water quality and biological communities and massive development of toxic microorganisms are some of the consequences of this phenomenon. To reveal changes in species composition and cell abundance of the taxocoenosis of epibenthic dinoflagellates before and after a harmful algal bloom event in the water column that lasted about 150days (August-December 2011) in the Dzilam - San Crisanto area (northern Yucatan Peninsula, southeastern Gulf of Mexico) were the main objectives of the present study. In August 2011 and September 2012, sampling along 20 transects perpendicular to the coastline along the entire northern Yucatan coast, starting from 20 sampling sites from El Cuyo in the east to Celestún in the west, at a distance of 50, 150 and 250m from the coast, was carried out. Physicochemical characteristics measured before and after the bloom were within the ranges previously reported in the study area. Salinity was the most stable characteristic, with mean values of 36.25 and 36.42 in 2011 and 2012, respectively. Phosphates were the only parameter that showed a wide range with higher values before the bloom (0.03-0.54µM/l). A total of 168 macrophyte (seaweeds and seagrasses), sponge and sediment samples (105 in 2011 and 63 in 2012) that included associated microphytobenthos were taken by snorkeling from 0.7 to 5m depth. Six substrate types were distinguished: Chlorophyta, Phaeophyceae, Rhodophyta, Angiospermae (seagrasses), Demospongiae (sponges) and sediment. Chlorophytes dominated the collected samples: 38 samples in 2011 and 23 in 2012. Avrainvillea longicaulis f. laxa predominated before the bloom and Udotea flabellum after it. In total, 25 epibenthic dinoflagellate species from 11 genera were found. The genus Prorocentrum was the most representative in terms of the number of species. The highest total dinoflagellate cell abundances were observed in the sites with different types of macrophytes (up to 2441cells/g substrate wet weight in 2011 and up to 1068cells/g in 2012). The lowest cell densities were observed in the areas with scarce or no macrophytes on sandy seafloor. Before the bloom, Prorocentrum rhathymum (up to 4995cells/g) and P. cf. sipadanensis (up to 5275cells/g) were the most abundant, and after the bloom the latter was dominant (up to 3559cells/g); in 2012, both variety of substrates and dinoflagellate cell abundance diminished. A canonical correspondence analysis revealed significant relationships between the physicochemical variables and epiphytic/benthic dinoflagellate species either before or after the bloom. The pelagic bloom resulted in the loss of substrate for epiphytic dinoflagellates, which caused replacement of the dominant species and a decrease in cell abundance of the whole taxocoenosis.

Carbon stocks of tropical coastal wetlands within the karstic landscape of the Mexican Caribbean.

Coastal wetlands can have exceptionally large carbon (C) stocks and their protection and restoration would constitute an effective mitigation strategy to climate change. Inclusion of coastal ecosystems in mitigation strategies requires quantification of carbon stocks in order to calculate emissions or sequestration through time. In this study, we quantified the ecosystem C stocks of coastal wetlands of the Sian Ka'an Biosphere Reserve (SKBR) in the Yucatan Peninsula, Mexico. We stratified the SKBR into different vegetation types (tall, medium and dwarf mangroves, and marshes), and examined relationships of environmental variables with C stocks. At nine sites within SKBR, we quantified ecosystem C stocks through measurement of above and belowground biomass, downed wood, and soil C. Additionally, we measured nitrogen (N) and phosphorus (P) from the soil and interstitial salinity. Tall mangroves had the highest C stocks (987±338 Mg ha(-1)) followed by medium mangroves (623±41 Mg ha(-1)), dwarf mangroves (381±52 Mg ha(-1)) and marshes (177±73 Mg ha(-1)). At all sites, soil C comprised the majority of the ecosystem C stocks (78-99%). Highest C stocks were measured in soils that were relatively low in salinity, high in P and low in N∶P, suggesting that P limits C sequestration and accumulation potential. In this karstic area, coastal wetlands, especially mangroves, are important C stocks. At the landscape scale, the coastal wetlands of Sian Ka'an covering ≈172,176 ha may store 43.2 to 58.0 million Mg of C.

Iron, cadmium, and chromium in seagrass (Thalassia testudinum) from a coastal nature reserve in karstic Yucatán.

The management of protected areas in karstic regions is a challenge because flooded cave systems form there and provide underground hydrological conducts that may link different zones. As a consequence, affectations to the protected areas can possibly occur as a consequence of human activities in remote areas and may therefore pass undetected. Thus, the monitoring of possible contaminants in these regions is becoming imperative. In this work, we analyze the concentration of essential (iron) and non-essential metals (cadmium and chromium) in the seagrass Thalassia testudinum that grows in Yalahau Lagoon, located in a near-to-pristine protected area of the Yucatán Peninsula, close to the rapidly developing touristic belt of the Mexican Caribbean. Salinity and silicate patterns show that Yalahau is an evaporation lagoon, where groundwater discharge is important. High iron (> 400 µg/g), cadmium (>4 µg/g), and chromium (≈ 1 µg/g) concentrations were found in the area of highest groundwater input of the lagoon. High levels (5.1 µg/g) were also found near the town dump. In the rest of the sampling sites, metal concentrations remained near to background levels as estimated from other works. Temporal changes of concentrations in the seagrass tissues show also a local input and an input from the groundwater that could provoke an environmental problem in the Yalahau Lagoon in the near future.

[Hurricane impact on Thalassia testudinum (Hydrocharitaceae) beds in the Mexican Caribbean]. / Impacto por huracanes en las praderas de Thalassia testudinum (Hydrocharitaceae) en el Caribe Mexicano.

Hurricanes have increased in strength and frequency as a result of global climate change. This research was conducted to study the spatio-temporal distribution and changes of Thalassia testudinum, the dominant species in Bahia de la Ascension (Quintana Roo, Mexico), when affected by heavy weather conditions. To complete this objective, a 2001 Landsat ETM+ image and the information from 525 sampling stations on morpho-functional and coverage of T. testudinum were used, and the seeds generated for the classification of eight benthic habitats. To quantify the changes caused by two hurricanes, we used two images, one of 1988 (Gilberto) and another of 1995 (Roxanne); other three data sets (2003, 2005 and 2007) were also used to describe the study area without major weather effects. Six categorial maps were obtained and subjected to analysis by 8 Landscape Ecology indexes, that describe the spatial characteristics, structure, function, change of the elements (matrix-patch-corridor), effects on ecosystems, connectivity, edges, shape and patch habitat fragmentation. Models indicate that T. testudinum may be classified as a continuum (matrix), since the fragments were not observed intermittently, but as a progression from minimum to maximum areas in reference to their coverage (ecological corridors). The fragments do not have a regular shape, indicating that the impacts are recent and may be due to direct effects (high-intensity hurricanes) or indirect (sediment). Fragments of type "bare soils" have a discontinuous distribution, and are considered to be the sites that have remained stable over a long timescale. While more dense coverage areas ("beds", "medium prairie" and "prairie") have low fragmentation and high connection of fragments. Features have an irregular perimeter and radial growth of formal; suggesting that the impact of meteors has no effect on the resilience of T. testudinum in this ecosystem, indicating good environmental quality to grow in this bay.

Impacto por huracanes en las praderas de Thalassia testudinum (Hydrocharitaceae) en el Caribe Mexicano

Hurricane impact on Thalassia testudinum (Hydrocharitaceae) beds in the Mexican Caribbean. Hurricanes have increased in strength and frequency as a result of global climate change. This research was conducted to study the spatio-temporal distribution and changes of Thalassia testudinum, the dominant species in Bahia de la Ascension (Quintana Roo, Mexico), when affected by heavy weather conditions. To complete this objective, a 2001 Landsat ETM+ image and the information from 525 sampling stations on morpho-functional and coverage of T. testudinum were used, and the seeds generated for the classification of eight benthic habitats. To quantify the changes caused by two hurricanes, we used two images, one of 1988 (Gilberto) and another of 1995 (Roxanne); other three data sets (2003, 2005 and 2007) were also used to describe the study area without major weather effects. Six categorial maps were obtained and subjected to analysis by 8 Landscape Ecology indexes, that describe the spatial characteristics, structure, function, change of the elements (matrix-patch-corridor), effects on ecosystems, connectivity, edges, shape and patch habitat fragmentation. Models indicate that T. testudinum may be classified as a continuum (matrix), since the fragments were not observed intermittently, but as a progression from minimum to maximum areas in reference to their coverage (ecological corridors). The fragments do not have a regular shape, indicating that the impacts are recent and may be due to direct effects (high-intensity hurricanes) or indirect (sediment). Fragments of type "bare soils" have a discontinuous distribution, and are considered to be the sites that have remained stable over a long timescale. While more dense coverage areas ("beds", "medium prairie" and "prairie") have low fragmentation and high connection of fragments. Features have an irregular perimeter and radial growth of formal; suggesting that the impact of meteors has no effect on the resilience of T. testudinum in this ecosystem, indicating good environmental quality to grow in this bay. Rev. Biol. Trop. 59 (1): 385-401. Epub 2011 March 01.

Thalassia testudinum es la macrófita dominante en Bahía de la Ascensión (Quintana Roo, México), se estudió para conocer su distribución espacio- temporal y determinar si fue afectada por el paso de huracanes que se han visto incrementados en fuerza y frecuencia por el cambio climático. Partiendo de una imagen Landsat ETM+de 2001 y usando información de grandes grupos morfofuncionales y de cobertura de T. testudinum adquiridas en 525 estaciones de muestreo, se obtienen las semillas para la clasificación supervisada de los hábitats bénticos (8 clases). Con el fin de cuantificar los cambios ocasionados por dos huracanes, se usaron dos imágenes, una de 1988 (Gilberto) y 1995 (Roxanne) y tres más (2003, 2005 y 2007) para monitoreo sin efectos meteorológicos mayores; a estos 6 mapas categóricos se les aplicó un análisis de Ecología del Paisaje usando 8 índices que describen las características espaciales, de estructura, función, cambio de los elementos (matriz-mancha-corredor), efectos sobre el ecosistema, conectividad, bordes, forma del parche y fragmentación del hábitat. Los modelos indican que T. testudinum puede clasificarse como un continuo (matriz), pues los fragmentos no se observan de forma intermitente, sino como una progresión de zonas mínimas a máximas en referencia a su cobertura (corredores ecológicos). No poseen una forma regular, indicando que los impactos son recientes y pueden ser debidos a efectos directos (huracanes de alta intensidad) e indirectos (aporte de sedimentos). Los fragmentos de tipo "suelos desnudos" presentan una distribución discontinua, considerándose sitios que han permanecido estables en una larga escala de tiempo; las zonas con coberturas más densas ("camas", "praderas medias" y "praderas") presentan baja fragmentación y alta conexión de sus fragmentos. Las características de poseer un perímetro irregular y crecimiento de formal radial, sugieren que el impacto de los meteoros no tiene efecto en la capacidad de resiliencia de T. testudinum en este ecosistema, indicando el buen estado de la calidad ambiental de la bahía para su crecimiento.

Terrestrial and oceanic influence on spatial hydrochemistry and trophic status in subtropical marine near-shore waters.

Terrestrial and oceanic influences like groundwater discharges and/or oceanic upwelling define the hydrochemical and biological characteristics of near-shore regions. In karst environments, such as the Yucatan Peninsula (SE Mexico), the balance between these two influences on spatial and temporal scales is poorly understood. This study focused on near-shore waters within 200 m offshore along the Yucatan coast. The trophic status and hydrochemical zones of the study area were determined as a function of physical and nutrient data collected from 2005 to 2006. The main terrestrial influence was groundwater discharge, while the most important marine influence was related to seasonal changes in water turbulence. Spatial differences (p < 0.05) were observed among salinity, light extinction coefficient (k), NO(3)(-), NH(4)(+), and Chl-a. Seasonal differences were observed for all variables except for k. During the dry season, terrestrial influences are the dominant factor on near-shore hydrochemistry. The region around Dzilam exhibited the maximum influence of groundwater discharge estimated by salinity dissolution (δ). During the rainy and "nortes" seasons, there is a balance between oceanic and terrestrial influences. The trophic status measured using the TRIX index, indicated that near-shore waters were mainly oligo-mesotrophic; with a meso-eutrophic status in areas with documented anthropogenic impacts. Four hydrological zones were identified by a Canonical Variate Analysis (CVA) using salinity, NO(2)(-), k and NH(4)(+) as the main discriminating variables. Zones I and II showed almost pristine conditions, with well-balanced terrestrial-oceanic influences. In Zone III, terrestrial influences such as groundwater discharges and inland pollution suggesting human impacts were dominant respect to the effects of oceanic influences like upwelling and sediment resuspension caused by winds and oceanic currents. Zone IV received enhanced groundwater and associated nutrients. Anthropogenic activities have led to ecosystem degradation but the speed at which this occurs depends on local and regional characteristics. Therefore, this study has defined those characteristics so as to enact better management policies.

Evaluation of the health status of a coastal ecosystem in southeast Mexico: Assessment of water quality, phytoplankton and submerged aquatic vegetation.

The coastal environment of the Yucatan Peninsula (SE, Mexico) includes a wide variety of ecosystems ranging from mangroves to coral reefs, resulting in a heterogeneous landscape. Specifically, the marine system is characterized by environmental differences which respond to regional and local forcing functions such as marine currents and groundwater discharges (GD). Such functional characteristics were used here to define four subregions across the Yucatan coast and diagnose the health status of this coastal marine ecosystem. To achieve this goal, we conducted an analysis and integration of water quality variables, an eutrophic assessment, evaluated changes in submerged aquatic vegetation (SAV), and analyzed the community structure and distribution of harmful phytoplankton. The first step was to determine the reference values for each subregion based on data previously collected from 2002 to 2006 along the coast of Yucatan, 200m offshore. The trophic index (TRIX) and Canadian index for aquatic life (CCMEWQI) were used to diagnose each subregion and then the ASSETS approach was conducted for Dzilam and Progreso, sampling localities on each end of the health status continuum (those with the best and worst conditions). Overall, results indicated that the marine coastal ecosystem of Yucatan is in good condition; however, differences were observed between subregions that can be attributed to local forcing functions and human impacts. Specifically, the central region (zone HZII, Progreso-Telchac) showed symptoms of initial eutrophication due to nutrient inputs from human activities. The eastern region (zone HZ III, Dzilam-Las Bocas) showed a meso-eutrophic condition linked to natural groundwater discharges, while the other two subregions western (zone HZI Celestun-Palmar) and caribbean (zone HZ IV Ria Lagartos-El Cuyo) exhibited symptoms of oligo-mesotrophic condition. These findings may be considered baseline information for coastal ecosystem monitoring programs in Yucatan, and the approach used could be replicated for other coastal areas.

Ballast water as a vector of coral pathogens in the Gulf of Mexico: the case of the Cayo Arcas coral reef.

The discharge of nutrients, phytoplankton and pathogenic bacteria through ballast water may threaten the Cayo Arcas reef system. To assess this threat, the quality of ballast water and presence of coral reef pathogenic bacteria in 30 oil tankers loaded at the PEMEX Cayo Arcas crude oil terminal were determined. The water transported in the ships originated from coastal, oceanic or riverine regions. Statistical associations among quality parameters and bacteria were tested using redundancy analysis (RDA). In contrast with coastal or oceanic water, the riverine water had high concentrations of coliforms, including Vibrio cholerae 01 and, Serratia marcescens and Sphingomona spp., which are frequently associated with "white pox" and "white plague type II" coral diseases. There were also high nutrient concentrations and low water quality index values (WQI and TRIX). The presence of V. cholerae 01 highlights the need for testing ballast water coming from endemic regions into Mexican ports.

Variations of phytoplankton community structure related to water quality trends in a tropical karstic coastal zone.

Phytoplankton community structure in coastal areas is a result of various environmental factors such as nutrients, light, grazing, temperature, and salinity. The Yucatan Peninsula is a karstic tropical region that is strongly influenced by submerged groundwater discharge (SGD) into the coastal zone. Phytoplankton community structure and its relationship with regional and local water quality variables were studied in four ports of the northwestern Yucatan Peninsula. Water quality was strongly related to SGD, and variations in phytoplankton community structure were related to local nutrient loading and hydrographic conditions, turbulence, and human impacts. Our study provides an ecological baseline for the Yucatan Peninsula and serves as a basis for establishing monitoring programs to predict changes at sites with high hydrological variation and in developing an early alert system for harmful toxic algal blooms.